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treedater - Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.
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7.70 score 28 stars 89 scripts 349 downloadstreestructure - Detect Population Structure Within Phylogenetic Trees
Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns.
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cpp
6.70 score 23 stars 18 scripts 313 downloads