Package: treedater 0.5.3

treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. The methods are described in Volz, E.M. and S.D.W. Frost (2017) <doi:10.1093/ve/vex025>.

Authors:Erik Volz [aut, cre]

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treedater/json (API)

# Install 'treedater' in R:
install.packages('treedater', repos = c('https://emvolz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/emvolz/treedater/issues

On CRAN:

6.86 score 24 stars 60 scripts 196 downloads 16 mentions 10 exports 9 dependencies

Last updated 3 years agofrom:7b8a72aa0e. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winWARNINGJan 28 2025
R-4.5-macWARNINGJan 28 2025
R-4.5-linuxWARNINGJan 28 2025
R-4.4-winWARNINGJan 28 2025
R-4.4-macWARNINGJan 28 2025
R-4.3-winWARNINGJan 28 2025
R-4.3-macWARNINGJan 28 2025

Exports:bootdatergibbs_jittergoodnessOfFitPlotoutlierLineagesoutlierTipsparbootrelaxedClockTestrootToTipRegressionPlotsampleYearsFromLabels

Dependencies:apedigestlatticelimSolvelpSolveMASSnlmequadprogRcpp

Molecular Clock Dating of Influenza H3N2

Erik Volz

Rendered fromh3n2.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2020-01-26
Started: 2018-04-24