Introduction | Invoking treedater from the command line | Influenza H3N2 HA | Detecting and removing outliers / testing for relaxed clock | Parametric bootstrap | Missing sample times
Package: treedater 2.0.0
treedater: Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.
Authors:
treedater_2.0.0.tar.gz
treedater_2.0.0.zip(r-4.7-any)treedater_2.0.0.zip(r-4.6-any)treedater_2.0.0.zip(r-4.5-any)
treedater_2.0.0.tgz(r-4.6-any)treedater_2.0.0.tgz(r-4.5-any)
treedater_2.0.0.tar.gz(r-4.7-any)treedater_2.0.0.tar.gz(r-4.6-any)
treedater_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
treedater/json (API)
| # Install 'treedater' in R: |
| install.packages('treedater', repos = c('https://emvolz.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/emvolz/treedater/issues
Last updated from:43ed1c03ab. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 128 | ||
| source / vignettes | OK | 302 | ||
| linux-release | OK | 117 | ||
| macos-release | OK | 183 | ||
| macos-oldrel | OK | 199 | ||
| windows-devel | OK | 96 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 82 | ||
| wasm-release | OK | 88 |
Exports:bootdatergibbs_jittergoodnessOfFitPlotoutlierLineagesoutlierTipsparbootrelaxedClockTestrootToTipRegressionPlotsampleYearsFromLabels
