Why a false discovery rate? | What fdr controls | A test for any structure at all | The false discovery rate is controlled | Serially sampled (heterochronous) trees | Large trees: Bonferroni vs Benjamini-Hochberg | Combining with node support

Introduction | Assign clusters without using node support | Sensitivity to the minimum clade size | Assign clusters using branch support | Using the CH-index

Structured coalescent simulation | Plotting results | Parameter choice and number of clusters | False discovery rate (default) | Subjective significance level | CH index

Introduction | Assign clusters using node support | Update a previous treestrucuture object with new sequences

Introduction | Invoking treedater from the command line | Influenza H3N2 HA | Detecting and removing outliers / testing for relaxed clock | Parametric bootstrap | Missing sample times