Package: treestructure 0.1.0
treestructure: Detect Population Structure Within Phylogenetic Trees
Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.
Authors:
treestructure_0.1.0.tar.gz
treestructure_0.1.0.zip(r-4.5)treestructure_0.1.0.zip(r-4.4)treestructure_0.1.0.zip(r-4.3)
treestructure_0.1.0.tgz(r-4.4-x86_64)treestructure_0.1.0.tgz(r-4.4-arm64)treestructure_0.1.0.tgz(r-4.3-x86_64)treestructure_0.1.0.tgz(r-4.3-arm64)
treestructure_0.1.0.tar.gz(r-4.5-noble)treestructure_0.1.0.tar.gz(r-4.4-noble)
treestructure_0.1.0.tgz(r-4.4-emscripten)treestructure_0.1.0.tgz(r-4.3-emscripten)
treestructure.pdf |treestructure.html✨
treestructure/json (API)
| # Install 'treestructure' in R: |
| install.packages('treestructure', repos = c('https://emvolz.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:9f502f40ce. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 20 2024 |
| R-4.5-win-x86_64 | OK | Nov 20 2024 |
| R-4.5-linux-x86_64 | OK | Nov 20 2024 |
| R-4.4-win-x86_64 | OK | Nov 20 2024 |
| R-4.4-mac-x86_64 | OK | Nov 20 2024 |
| R-4.4-mac-aarch64 | OK | Nov 20 2024 |
| R-4.3-win-x86_64 | OK | Nov 20 2024 |
| R-4.3-mac-x86_64 | OK | Nov 20 2024 |
| R-4.3-mac-aarch64 | OK | Nov 20 2024 |
Exports:trestruct
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plot TreeStructure tree with cluster and partition variables | plot.TreeStructure |
| Detect cryptic population structure in time trees | trestruct |
